PhD TOAST amplicon designer Turning genome-scale mutation data into an optimised TB sequencing panel Antimicrobial peptide design An LSTM generative model that proposes new peptides active against TB GNN for positive selection Reading evolutionary signal off phylogenetic trees with graph attention TB treatment outcome prediction Staged risk prediction from clinical records, built for messy real-world data TB transmission in the Philippines Whole-genome sequencing of 732 isolates, including prison transmission clusters Detecting mixed TB infections Using Gaussian mixture models to find multiple strains in one patient